Surjit B. Dixit: search on Z-Library

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1

Can free energy calculations be fast and accurate at the same time? Binding of low-affinity, non-peptide inhibitors to the SH2 domain of the src protein

Christophe Chipot, Xavier Rozanska, Surjit B. Dixit

Journal:

Journal of Computer-Aided Molecular Design

Year:

2005

Language:

english

File:

PDF, 281 KB

english, 2005

2

Molecular dynamics simulations of DNA curvature and flexibility: Helix phasing and premelting

D. L. Beveridge, Surjit B. Dixit, Gabriela Barreiro, Kelly M. Thayer

Journal:

Year:

2004

Language:

english

File:

PDF, 471 KB

english, 2004

3

Structure and axis curvature in two dA6·dT6 DNA oligonucleotides: Comparison of molecular dynamics simulations with results from crystallography and NMR spectroscopy

Surjit B. Dixit, Felicia Pitici, D. L. Beveridge

Journal:

Year:

2004

Language:

english

File:

PDF, 695 KB

english, 2004

4

Free Energy Analysis of Protein–DNA Binding: The EcoRI Endonuclease–DNA Complex

B Jayaram, K.J McConnell, Surjit B Dixit, D.L Beveridge

Journal:

Journal of Computational Physics

Year:

1999

Language:

english

File:

PDF, 375 KB

english, 1999

5

Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulations

Dixit, Surjit B, Mezei, Mihaly, Beveridge, David L

Journal:

Journal of Biosciences

Year:

2012

Language:

english

File:

PDF, 1.56 MB

english, 2012

6

How Do Hydrogen Bonds Contribute to Protein-DNA Recognition?

Dixit, Surjit B., Arora, Nidhi, Jayaram, B.

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2000

Language:

english

File:

PDF, 64 KB

english, 2000

7

CTL Recognition of a Protective Immunodominant Influenza A Virus Nucleoprotein Epitope Utilizes a Highly Restricted Vβ but Diverse Vα Repertoire: Functional and Structural Implications

Weimin Zhong, Surjit B. Dixit, Robert J. Mallis, Haribabu Arthanari, Alexey A. Lugovskoy, David L. Beveridge, Gerhard Wagner, Ellis L. Reinherz

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.38 MB

english, 2007

8

Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. I. Research Design and Results on d(CpG) Steps

Beveridge, David L., Barreiro, Gabriela, Suzie Byun, K., Case, David A., Cheatham, Thomas E., Dixit, Surjit B., Giudice, Emmanuel, Lankas, Filip, Lavery, Richard, Maddocks, John H., Osman, Roman, Seib

Journal:

Biophysical Journal

Year:

2004

Language:

english

File:

PDF, 346 KB

english, 2004

9

Axis Curvature and Ligand Induced Bending in the CAP-DNA Oligomers

Dixit, Surjit B., Beveridge, David L.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 115 KB

english, 2005

10

Induced Fit and the Entropy of Structural Adaptation in the Complexation of CAP and λ-Repressor with Cognate DNA Sequences

Dixit, Surjit B., Andrews, David Q., Beveridge, D.L.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 376 KB

english, 2005

11

Molecular Dynamics Simulations of the 136 Unique Tetranucleotide Sequences of DNA Oligonucleotides. II: Sequence Context Effects on the Dynamical Structures of the 10 Unique Dinucleotide Steps

Dixit, Surjit B., Beveridge, David L., Case, David A., Cheatham, Thomas E., Giudice, Emmanuel, Lankas, Filip, Lavery, Richard, Maddocks, John H., Osman, Roman, Sklenar, Heinz, Thayer, Kelly M., Varnai

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 780 KB

english, 2005

12

Prokaryotic Gene Finding Based on Physicochemical Characteristics of Codons Calculated from Molecular Dynamics Simulations

Singhal, Poonam, Jayaram, B., Dixit, Surjit B., Beveridge, David L.

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 711 KB

english, 2008

13

Spectroscopic and Molecular Dynamics Evidence for a Sequential Mechanism for the A-to-B Transition in DNA

Knee, Kelly M., Dixit, Surjit B., Aitken, Colin Echeverría, Ponomarev, Sergei, Beveridge, D.L., Mukerji, Ishita

Journal:

Biophysical Journal

Year:

2008

Language:

english

File:

PDF, 1.94 MB

english, 2008

14

Can Absolute Free Energies of Association Be Estimated from Molecular Mechanical Simulations? The Biotin−Streptavidin System Revisited

Dixit, Surjit B., Chipot, Christophe

Journal:

Journal of Physical Chemistry A

Year:

2001

Language:

english

File:

PDF, 67 KB

english, 2001

15

Protein engineering and the use of molecular modeling and simulation: The case of heterodimeric Fc engineering

Spreter Von Kreudenstein, Thomas, Lario, Paula I., Dixit, Surjit B.

Journal:

Year:

2014

Language:

english

File:

PDF, 4.75 MB

english, 2014

16

Root Mean Square Deviation Probability Analysis of Molecular Dynamics Trajectories on DNA

Dixit, Surjit B., Ponomarev, Sergei Y., Beveridge, David L.

Journal:

Journal of Chemical Information and Modeling

Year:

2006

Language:

english

File:

PDF, 472 KB

english, 2006

17

Solvation thermodynamics of amino acids Assessment of the electrostatic contribution and force-field dependence

Dixit, Surjit B., Bhasin, R., Rajasekaran, E., Jayaram, B.

Journal:

Journal of the Chemical Society Faraday Transactions

Year:

1997

Language:

english

File:

PDF, 291 KB

english, 1997

18

LC-MS characterization and purity assessment of a prototype bispecific antibody

Woods, R. Jeremy, Xie, Michael Hongwei, Von Kreudenstein, Thomas Spreter, Ng, Gordon Y., Dixit, Surjit B.

Journal:

Year:

2013

Language:

english

File:

PDF, 4.33 MB

english, 2013

19

Human Subtilase SKI-1/S1P Is a Master Regulator of the HCV Lifecycle and a Potential Host Cell Target for Developing Indirect-Acting Antiviral Agents

Olmstead, Andrea D., Knecht, Wolfgang, Lazarov, Ina, Dixit, Surjit B., Jean, François, Luo, Guangxiang George

Journal:

Year:

2012

Language:

english

File:

PDF, 3.59 MB

english, 2012

20

Asymmetric Fc Engineering for Bispecific Antibodies with Reduced Effector Function

Escobar-Cabrera, Eric, Lario, Paula, Baardsnes, Jason, Schrag, Joseph, Durocher, Yves, Dixit, Surjit

Journal:

Year:

2017

Language:

english

File:

PDF, 2.79 MB

english, 2017

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